GSVIVT01033362001


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases ADPG2. polygalacturonase abscission zone A. thaliana (PGAZAT)


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01033362001
Cluster HCCA cluster: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT1G80170 No alias Pectin lyase-like superfamily protein 0.05 Gene family
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.04 Gene family
AT5G39910 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01032114001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032117001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032118001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
MA_285723g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Smo111266 PACid_15408883 No description available 0.02 Gene family
Solyc01g087280.1.1 Solyc01g087280.1 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc12g009420.2.1 Solyc12g009420.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d013032 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Zm00001d038874 GRMZM2G079263 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 107 432
No external refs found!