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  5. Nbi_g04343

Nbi_g04343 (AFB2)


Aliases : AFB2

Description : substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) & original description: none


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04343
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT4G24390 No alias RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g046270 AFB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28117 AFB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene04139.t1 TIR1, Aspi01Gene04139 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.04 OrthoFinder output from all 47 species
Ceric.11G069600.1 COI1, Ceric.11G069600 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g07920 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Gb_04106 COI1 component COI of jasmonic acid receptor complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g63420.1 COI1, LOC_Os01g63420 component COI of jasmonic acid receptor complex 0.03 OrthoFinder output from all 47 species
LOC_Os04g32460.1 AFB2, LOC_Os04g32460 component TIR1/AFB of auxin receptor complex. component... 0.03 OrthoFinder output from all 47 species
Msp_g07144 COI1 component *(COI) of jasmonic acid receptor complex &... 0.04 OrthoFinder output from all 47 species
Pnu_g20969 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Pnu_g20970 COI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06925 COI1 component *(COI) of jasmonic acid receptor complex &... 0.08 OrthoFinder output from all 47 species
Spa_g18052 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Spa_g28126 COI1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e028730_P001 COI1, Zm00001e028730 component COI of jasmonic acid receptor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR041101 Transp_inhibit 104 149
IPR041567 COI1_F-box 47 84
No external refs found!