GSVIVT01033303001


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases ADPG2. polygalacturonase abscission zone A. thaliana (PGAZAT)


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01033303001
Cluster HCCA cluster: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT1G80170 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G39910 No alias Pectin lyase-like superfamily protein 0.02 Gene family
GSVIVT01008062001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01017302001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01017305001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032117001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032118001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os05g46510 Os05g0542800 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_285723g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc04g015530.2.1 Solyc04g015530.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc10g080210.2.1 Solyc10g080210.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 110 433
No external refs found!