Nbi_g04244 (VPS4, SKD1, ATSKD1)

Aliases : VPS4, SKD1, ATSKD1

Description : EC_3.6 hydrolase acting on acid anhydride & original description: none

Gene families : OG0002846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04244
Cluster	HCCA: Cluster_153

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g079300	VPS4, SKD1, ATSKD1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.01	OrthoFinder output from all 47 species
Dac_g03336	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
LOC_Os01g04814.1	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.02	OrthoFinder output from all 47 species
MA_34399g0010	VPS4, SKD1, ATSKD1	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.02	OrthoFinder output from all 47 species
Mp8g01610.1	VPS4, SKD1, ATSKD1	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.02	OrthoFinder output from all 47 species
Msp_g05076	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Sam_g37514	No alias	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Solyc11g007170.2.1	VPS4, SKD1,...	serine carboxypeptidase. ATPase component VPS4/SKD1 of...	0.02	OrthoFinder output from all 47 species
Spa_g11001	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.06	OrthoFinder output from all 47 species
Zm00001e025779_P001	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	324	357
IPR015415	Vps4_C	373	437
IPR007330	MIT_dom	7	70
IPR003959	ATPase_AAA_core	170	299

External Links

No external refs found!