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  5. Nbi_g04179

Nbi_g04179 (RAD51, ATRAD51)


Aliases : RAD51, ATRAD51

Description : component *(RAD51) of BRCC regulatory deubiquination complex & original description: none


Gene families : OG0001716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04179
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Ala_g23150 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.15 OrthoFinder output from all 47 species
Als_g52823 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.11 OrthoFinder output from all 47 species
Aspi01Gene38719.t1 XRCC3, ATXRCC3,... component *(XRCC3) of RAD51c-XRCC3 accessory DSB repair... 0.05 OrthoFinder output from all 47 species
Aspi01Gene65488.t1 RAD51, ATRAD51,... component *(RAD51) of BRCC regulatory deubiquination... 0.09 OrthoFinder output from all 47 species
Azfi_s0037.g026051 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.03 OrthoFinder output from all 47 species
Ceric.01G082000.1 RAD51, ATRAD51,... component *(RAD51) of BRCC regulatory deubiquination... 0.16 OrthoFinder output from all 47 species
Ceric.17G014900.1 XRCC3, ATXRCC3,... component *(XRCC3) of RAD51c-XRCC3 accessory DSB repair... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000870.37 RAD51, ATRAD51 DNA damage response.BRCC DNA-damage response... 0.02 OrthoFinder output from all 47 species
Cre06.g278151 XRCC3, ATXRCC3 DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre14.g622850 RAD51, ATRAD51 DNA damage response.BRCC DNA-damage response... 0.02 OrthoFinder output from all 47 species
Dac_g00622 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.16 OrthoFinder output from all 47 species
Dcu_g00814 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.08 OrthoFinder output from all 47 species
GSVIVT01015002001 RAD51, ATRAD51 DNA damage response.BRCC DNA-damage response... 0.04 OrthoFinder output from all 47 species
Gb_14443 RAD51, ATRAD51 DNA repair protein RAD51 homolog OS=Solanum lycopersicum... 0.05 OrthoFinder output from all 47 species
LOC_Os02g35450.1 XRCC3, ATXRCC3,... component XRCC3 of RAD51c-XRCC3 accessory DSB repair heterodimer 0.02 OrthoFinder output from all 47 species
LOC_Os12g31370.1 RAD51, ATRAD51,... component RAD51 of BRCC DNA-damage response complex 0.03 OrthoFinder output from all 47 species
Len_g09185 XRCC3, ATXRCC3 component *(XRCC3) of RAD51c-XRCC3 accessory DSB repair... 0.04 OrthoFinder output from all 47 species
Len_g59568 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.08 OrthoFinder output from all 47 species
Lfl_g17235 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.11 OrthoFinder output from all 47 species
MA_93267g0010 RAD51, ATRAD51 DNA repair protein RAD51 homolog 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
MA_93267g0020 RAD51, ATRAD51 DNA repair protein RAD51 homolog 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp3g22920.1 RAD51, ATRAD51 component RAD51 of BRCC DNA-damage response complex 0.02 OrthoFinder output from all 47 species
Mp7g15410.1 XRCC3, ATXRCC3 component XRCC3 of RAD51c-XRCC3 accessory DSB repair heterodimer 0.08 OrthoFinder output from all 47 species
Msp_g01981 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.12 OrthoFinder output from all 47 species
Ore_g29670 RAD51, ATRAD51 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32787 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.07 OrthoFinder output from all 47 species
Ore_g45230 RAD51, ATRAD51 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02833 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000652 ARLIM15, DMC1, ATDMC1 not classified & original description: CDS=1-1248 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007848 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021196 XRCC3, ATXRCC3 component *(XRCC3) of RAD51c-XRCC3 accessory DSB repair... 0.02 OrthoFinder output from all 47 species
Sam_g14921 No alias component *(XRCC3) of RAD51c-XRCC3 accessory DSB repair... 0.02 OrthoFinder output from all 47 species
Solyc07g017540.4.1 RAD51, ATRAD51,... component RAD51 of BRCC DNA-damage response complex 0.04 OrthoFinder output from all 47 species
Spa_g12699 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.04 OrthoFinder output from all 47 species
Spa_g38367 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.06 OrthoFinder output from all 47 species
Tin_g05894 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.17 OrthoFinder output from all 47 species
Zm00001e035339_P001 RAD51, ATRAD51,... component RAD51 of BRCC DNA-damage response complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013632 DNA_recomb/repair_Rad51_C 81 333
No external refs found!