Nbi_g04003 (emb1473)

Aliases : emb1473

Description : component *(uL13c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04003

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00228230	emb1473,...	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
AT1G78630	emb1473	Ribosomal protein L13 family protein	0.05	OrthoFinder output from all 47 species
Aev_g00534	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g09807	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g17613	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aob_g06248	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g00301	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Azfi_s0224.g058887	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g03008	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.14G072800.1	emb1473, Ceric.14G072800	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cre06.g264350	emb1473	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Dac_g17592	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g00726	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dde_g01255	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ehy_g04479	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01014101001	emb1473	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Gb_28095	emb1473	component psRPL13 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os01g54540.1	emb1473, LOC_Os01g54540	component psRPL13 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Len_g01005	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g03832	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
MA_10433400g0010	emb1473	component psRPL13 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
MA_27171g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Mp3g07030.1	emb1473	component psRPL13 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Msp_g09623	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g11308	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ppi_g11794	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018050	No alias	not classified & original description: CDS=57-500	0.03	OrthoFinder output from all 47 species
Sam_g16893	No alias	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc07g062190.4.1	emb1473, Solyc07g062190	component psRPL13 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Solyc12g014390.3.1	emb1473, Solyc12g014390	component psRPL13 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Tin_g09876	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	100	218

External Links

No external refs found!

Nbi_g04003 (emb1473)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation