GSVIVT01032579001


Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). SIN3-like 2 (SNL2)


Gene families : OG_01_0000397 (Gene family) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01032579001
Cluster HCCA cluster: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.05 Gene family
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.13 Gene family
AT1G59890 SNL5 SIN3-like 5 0.04 Gene family
AT1G70060 SNL4 SIN3-like 4 0.04 Gene family
AT3G01320 SNL1 SIN3-like 1 0.17 Gene family
AT5G15020 SNL2 SIN3-like 2 0.13 Gene family
Cpa|evm.model.tig00001155.28 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.02 Gene family
Cre03.g180800 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.02 Gene family
LOC_Os01g01960 Os01g0109700 35.1.25 not assigned.no ontology.paired amphipathic... 0.02 Gene family
MA_18241g0010 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.06 Gene family
Solyc02g067570.3.1 Solyc02g067570.3 27.3.67 RNA.regulation of transcription.putative... 0.18 Gene family
Solyc02g087360.3.1 Solyc02g087360.3 27.3.67 RNA.regulation of transcription.putative... 0.12 Gene family
Solyc05g006540.3.1 Solyc05g006540.3 35.1.25 not assigned.no ontology.paired amphipathic... 0.04 Gene family
Zm00001d008429 GRMZM2G334457 35.1.25 not assigned.no ontology.paired amphipathic... 0.1 Gene family
Zm00001d040123 GRMZM2G075320 35.1.25 not assigned.no ontology.paired amphipathic... 0.13 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003822 PAH 363 406
IPR003822 PAH 158 202
IPR003822 PAH 74 118
IPR013194 HDAC_interact_dom 475 566
IPR031693 Sin3_C 1078 1326
No external refs found!