GSVIVT01032545001


Description : 29.5.7 protein.degradation.metalloprotease mutant has Late flowering Early senescence Matrix Metalloproteinase matrix metalloproteinase (MMP)


Gene families : OG_01_0000764 (Gene family) Phylogenetic Tree(s): OG0000764_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01032545001
Cluster HCCA cluster: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT1G59970 No alias Matrixin family protein 0.03 Gene family
AT1G70170 MMP matrix metalloproteinase 0.04 Gene family
LOC_Os02g50730 Os02g0740700 29.5.7 protein.degradation.metalloprotease Matrixin... 0.02 Gene family
LOC_Os10g40830 Os10g0557900 29.5.7 protein.degradation.metalloprotease Matrixin... 0.03 Gene family
Solyc04g005050.2.1 Solyc04g005050.2 29.5.7 protein.degradation.metalloprotease Matrixin... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA InterProScan
BP GO:0006508 proteolysis IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
CC GO:0031012 extracellular matrix IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 28 89
IPR001818 Pept_M10_metallopeptidase 115 260
No external refs found!