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  5. Nbi_g03679

Nbi_g03679


Description : peptidyl-tRNA hydrolase *(VMS1) & original description: none


Gene families : OG0010640 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0010640_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03679

Target Alias Description ECC score Gene Family Method Actions
Spa_g15007 No alias peptidyl-tRNA hydrolase *(VMS1) & original description: none 0.02 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR041540 VATC 615 648
IPR041175 VLRF1/Vms1 224 366
IPR002110 Ankyrin_rpt 434 475
No external refs found!