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  5. Nbi_g03558

Nbi_g03558 (EIF4A-2)


Aliases : EIF4A-2

Description : mRNA unwinding factor *(eIF4A)) & original description: none


Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03558
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0064.g035634 EIF4A-III not classified & original description: CDS=274-1275 0.03 OrthoFinder output from all 47 species
Ceric.14G044600.1 EIF4A-2, Ceric.14G044600 mRNA unwinding factor *(eIF4A)) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g10266 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03950 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.04 OrthoFinder output from all 47 species
Msp_g01109 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Msp_g34412 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10223 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c22_4200V3.1 EIF4A-III, Pp3c22_4200 eukaryotic initiation factor 4A-III 0.02 OrthoFinder output from all 47 species
Pp3c7_3770V3.1 EIF4A-2, Pp3c7_3770 eukaryotic translation initiation factor 4A1 0.01 OrthoFinder output from all 47 species
Solyc11g033280.2.1 EIF4A-III, Solyc11g033280 helicase component eIF4A3 of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Zm00001e016284_P001 EIF4A-III, Zm00001e016284 helicase component eIF4A3 of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Zm00001e023523_P001 EIF4A-III, Zm00001e023523 helicase component eIF4A3 of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 61 222
IPR001650 Helicase_C 262 370
No external refs found!