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  5. Nbi_g03507

Nbi_g03507 (BPC3, ATBPC3)


Aliases : BPC3, ATBPC3

Description : BBR/BPC-type transcription factor & original description: none


Gene families : OG0000626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03507

Target Alias Description ECC score Gene Family Method Actions
Adi_g021101 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03756 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G051000.1 BPC3, ATBPC3,... BBR/BPC-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Nbi_g30067 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05166 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03032 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11668 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g18093 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01840 BPC7, ATBPC7, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13421 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036601_P001 BPC6, BBR/BPC6,... transcription factor (BBR/BPC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR010409 GAGA-bd_tscrpt_act 1 303
No external refs found!