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  5. Nbi_g03493

Nbi_g03493 (CYCD1;1, ATCYCD1;1)


Aliases : CYCD1;1, ATCYCD1;1

Description : regulatory protein *(CYCD) of cell cycle & original description: none


Gene families : OG0000395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03493
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.03 OrthoFinder output from all 47 species
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.03 OrthoFinder output from all 47 species
AT4G37630 CYCD5;1 cyclin d5;1 0.02 OrthoFinder output from all 47 species
Ala_g05661 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ala_g20231 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ala_g22032 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Als_g01667 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Als_g11704 ATCYCD2;1, CYCD2;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Als_g12082 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aop_g03463 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aop_g12696 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aop_g68494 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene22554.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene60777.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Cba_g00990 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Cba_g16891 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ceric.32G006300.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Dac_g11389 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Dac_g16428 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.07 OrthoFinder output from all 47 species
Dcu_g03868 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.07 OrthoFinder output from all 47 species
Dcu_g07032 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01003674001 CYCD6;1 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 OrthoFinder output from all 47 species
Gb_01779 ATCYCD2;1, CYCD2;1 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Gb_03361 CYCD3, CYCD3;1 cyclin (CYCD) 0.05 OrthoFinder output from all 47 species
LOC_Os03g10650.1 CYCD5;1, LOC_Os03g10650 cyclin (CYCD) 0.04 OrthoFinder output from all 47 species
Len_g12697 ATCYCD2;1, CYCD2;1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10565 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Lfl_g13622 ATCYCD2;1, CYCD2;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
MA_103834g0010 CYCD1;1, ATCYCD1;1 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
MA_10429174g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10429174g0030 CYCD3, CYCD3;1 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
MA_559426g0020 CYCD3;3 cyclin (CYCD) 0.04 OrthoFinder output from all 47 species
MA_69479g0020 CYCD3, CYCD3;1 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
MA_94639g0010 CYCD1;1, ATCYCD1;1 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Msp_g02755 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ore_g36210 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ppi_g10385 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ppi_g11937 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014749 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020437 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0134.g022297 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023971 No alias regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sam_g14687 No alias regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Solyc04g078470.3.1 CYCD3;3, Solyc04g078470 cyclin (CYCD) 0.04 OrthoFinder output from all 47 species
Spa_g06278 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g11128 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Spa_g15040 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g28868 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Spa_g47878 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Tin_g00808 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Tin_g06567 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 206 301
IPR006671 Cyclin_N 75 203
No external refs found!