GSVIVT01032138001


Description : 28.1 DNA.synthesis/chromatin structure Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. topoisomerase II (TOPII)


Gene families : OG_01_0004172 (Gene family) Phylogenetic Tree(s): OG0004172_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01032138001
Cluster HCCA cluster: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT3G23890 TOPII, ATTOPII topoisomerase II 0.33 Gene family
Cpa|evm.model.tig00021432.55 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.04 Gene family
Cpa|evm.model.tig00021433.2 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.05 Gene family
Cre01.g009250 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.05 Gene family
LOC_Os02g47150 Os02g0699700 28.1 DNA.synthesis/chromatin structure Encodes a... 0.06 Gene family
MA_133272g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.1 Gene family
MA_6634g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.11 Gene family
Smo127267 PACid_15411383 28.1 DNA.synthesis/chromatin structure Encodes a... 0.09 Gene family
Smo98330 PACid_15412854 28.1 DNA.synthesis/chromatin structure Encodes a... 0.1 Gene family
Solyc01g087500.3.1 Solyc01g087500.3 28.1 DNA.synthesis/chromatin structure Encodes a... 0.33 Gene family
Zm00001d017720 GRMZM2G021270 28.1 DNA.synthesis/chromatin structure Encodes a... 0.23 Gene family
Zm00001d051542 GRMZM2G121210 28.1 DNA.synthesis/chromatin structure Encodes a... 0.26 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
BP GO:0006265 DNA topological change IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013506 Topo_IIA_bsu_dom2 265 420
IPR031660 TOPRIM_C 566 693
IPR003594 HATPase_C 74 219
IPR002205 Topo_IIA_A/C 696 1121
IPR006171 TOPRIM_domain 452 550
No external refs found!