GSVIVT01032118001


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. QUARTET 2 (QRT2)


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01032118001
Cluster HCCA cluster: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.02 Gene family
AT3G07970 QRT2 Pectin lyase-like superfamily protein 0.04 Gene family
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.02 Gene family
AT5G27530 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G39910 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT5G44830 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01017305001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01032114001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032117001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01033303001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01033362001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01033364001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01038447001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc01g087280.1.1 Solyc01g087280.1 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc12g009420.2.1 Solyc12g009420.2 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d038874 GRMZM2G079263 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 120 443
No external refs found!