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  5. Nbi_g03153

Nbi_g03153 (HEN2)


Aliases : HEN2

Description : RNA helicase component *(HEN2) of Nuclear Exosome Targeting (NEXT) activation complex & original description: none


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 OrthoFinder output from all 47 species
AT3G46960 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 OrthoFinder output from all 47 species
Adi_g022453 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aev_g01540 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 OrthoFinder output from all 47 species
Aev_g05538 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.02 OrthoFinder output from all 47 species
Als_g01202 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Aob_g12480 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Aop_g09338 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15974.t1 HEN2, Aspi01Gene15974 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Cba_g07746 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.15G051600.1 Ceric.15G051600 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.17G002800.1 Ceric.17G002800 RNA helicase component *(MTR4) of TRAMP nucleolar... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.2 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.01 OrthoFinder output from all 47 species
Cre11.g482483 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Dac_g10719 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.08 OrthoFinder output from all 47 species
Dcu_g12374 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.04 OrthoFinder output from all 47 species
Ehy_g24206 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 OrthoFinder output from all 47 species
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 OrthoFinder output from all 47 species
LOC_Os11g07500.1 HEN2, LOC_Os11g07500 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Len_g22463 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 OrthoFinder output from all 47 species
MA_10437094g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.03 OrthoFinder output from all 47 species
Msp_g15177 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ore_g41022 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Ppi_g32958 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 OrthoFinder output from all 47 species
Ppi_g57471 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Solyc01g103080.3.1 Solyc01g103080 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Solyc06g005990.4.1 Solyc06g005990 DExH-box ATP-dependent RNA helicase DExH11... 0.03 OrthoFinder output from all 47 species
Solyc12g017860.3.1 HEN2, Solyc12g017860 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Spa_g11434 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Spa_g29638 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.08 OrthoFinder output from all 47 species
Tin_g21647 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 847 1016
IPR011545 DEAD/DEAH_box_helicase_dom 88 234
IPR001650 Helicase_C 411 498
IPR025696 rRNA_proc-arch_dom 554 820
No external refs found!