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  5. Nbi_g03105

Nbi_g03105 (LACS4)


Aliases : LACS4

Description : EC_6.2 ligase forming carbon-sulfur bond & original description: none


Gene families : OG0000612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00113600 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00117760 CER8, LACS1,... Enzyme classification.EC_6 ligases.EC_6.2 ligase forming... 0.02 OrthoFinder output from all 47 species
AT1G49430 LRD2, LACS2 long-chain acyl-CoA synthetase 2 0.06 OrthoFinder output from all 47 species
AT2G47240 CER8, LACS1 AMP-dependent synthetase and ligase family protein 0.03 OrthoFinder output from all 47 species
Adi_g114074 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aev_g04110 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Ala_g09619 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene16145.t1 ATLACS7, LACS7,... EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene16148.t1 ATLACS7, LACS7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33528.t1 CER8, LACS1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.24G023000.1 LACS4, Ceric.24G023000 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Dac_g13723 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.06 OrthoFinder output from all 47 species
Dcu_g08877 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Dde_g01611 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g08481 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01028155001 CER8, LACS1 Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_09959 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_32132 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g35400.1 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Len_g14280 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Lfl_g08320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
MA_10432761g0010 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_839621g0010 No alias Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g01380.1 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g09778 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Msp_g20518 ATLACS7, LACS7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31368 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Ppi_g17117 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.06 OrthoFinder output from all 47 species
Sam_g15770 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Solyc01g079240.3.1 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc01g109180.4.1 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc09g075770.3.1 LACS6, ATLACS6,... peroxisomal long-chain acyl-CoA synthetase 0.03 OrthoFinder output from all 47 species
Spa_g26451 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Spa_g40891 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Zm00001e024608_P001 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 63 533
No external refs found!