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Nbi_g02904


Description : E3 ubiquitin ligase *(CHY) & original description: none


Gene families : OG0002193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02904
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031467001 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01033674001 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os03g22680.1 LOC_Os03g22680 E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
MA_10429565g0010 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.02 OrthoFinder output from all 47 species
MA_10436725g0010 No alias E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_126866g0010 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Zm00001e004657_P008 Zm00001e004657 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008913 Znf_CHY 47 127
IPR039512 RCHY1_zinc-ribbon 230 287
IPR001841 Znf_RING 181 224
No external refs found!