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  5. Nbi_g02820

Nbi_g02820


Description : not classified & original description: none


Gene families : OG0006499 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006499_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02820
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00012640 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.07 OrthoFinder output from all 47 species
AT3G23700 No alias Nucleic acid-binding proteins superfamily 0.06 OrthoFinder output from all 47 species
Adi_g001996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03265 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g04569 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Als_g08286 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g01702 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g27368 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene14361.t1 Aspi01Gene14361 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0534.g076070 No alias not classified & original description: CDS=250-1461 0.1 OrthoFinder output from all 47 species
Cba_g16549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G080900.1 Ceric.11G080900 not classified & original description: pacid=50596374... 0.06 OrthoFinder output from all 47 species
Cre03.g148950 No alias 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dac_g02753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03799 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g07957 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01031632001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.12 OrthoFinder output from all 47 species
Gb_13624 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.05 OrthoFinder output from all 47 species
LOC_Os03g62780.1 LOC_Os03g62780 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g12635 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
MA_37826g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp6g19820.1 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.02 OrthoFinder output from all 47 species
Msp_g04843 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g26841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40824 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g12492 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g01274 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g05108 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023855 No alias not classified & original description: CDS=194-1321 0.03 OrthoFinder output from all 47 species
Sam_g18454 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30081 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g39278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo96268 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.03 OrthoFinder output from all 47 species
Spa_g11144 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g18988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23785 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006347_P003 Zm00001e006347 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 192 268
IPR003029 S1_domain 104 178
No external refs found!