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  5. Nbi_g02798

Nbi_g02798 (ATRBP31, CP31, ATRBP33, RBP31)


Aliases : ATRBP31, CP31, ATRBP33, RBP31

Description : not classified & original description: none


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02798

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.05 OrthoFinder output from all 47 species
AT5G50250 CP31B chloroplast RNA-binding protein 31B 0.03 OrthoFinder output from all 47 species
Adi_g018859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022371 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g00606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08489 CP31B not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g10701 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g05873 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07142 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0444.g070620 ATRBP31, CP31,... not classified & original description: CDS=17-1102 0.02 OrthoFinder output from all 47 species
Cba_g20170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05227 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10561 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007596001 CP31B RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01022600001 PDE322, CP33 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.03 OrthoFinder output from all 47 species
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.05 OrthoFinder output from all 47 species
GSVIVT01032039001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
GSVIVT01032361001 CP31B RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os02g57010.1 LOC_Os02g57010 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g44290.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Len_g10051 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57236 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g01140 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434075g0010 CP31B component psPSRP2 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
MA_185349g0010 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g06420 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03561 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19963 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27196 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07061 ATRBP31, CP31,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g33947 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.02 OrthoFinder output from all 47 species
Pp3c24_17170V3.1 Pp3c24_17170 chloroplast RNA-binding protein 29 0.01 OrthoFinder output from all 47 species
Ppi_g02835 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g18180 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015482 ATRBP31, CP31,... not classified & original description: CDS=157-1524 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021464 CP31B not classified & original description: CDS=19-840 0.03 OrthoFinder output from all 47 species
Sam_g10911 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g23920 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g006940.4.1 PDE322, CP33,... 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Solyc08g076840.3.1 Solyc08g076840 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Solyc09g007850.3.1 Solyc09g007850 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Spa_g07686 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001824_P002 Zm00001e001824 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e003947_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Zm00001e010844_P001 Zm00001e010844 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Zm00001e022086_P002 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Zm00001e032835_P001 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e033465_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Zm00001e033636_P003 Zm00001e033636 component psPSRP2 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004325 ferrochelatase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 110 180
IPR000504 RRM_dom 207 277
No external refs found!