1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g02659

Nbi_g02659 (EXPA16, ATHEXP ALPHA...)


Aliases : EXPA16, ATHEXP ALPHA 1.7, ATEXP16, EXP16, ATEXPA16

Description : alpha-class expansin & original description: none


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02659
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00146900 ATHEXP BETA 3.1,... Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.02 OrthoFinder output from all 47 species
AT4G38400 ATEXPL2, EXPL2,... expansin-like A2 0.02 OrthoFinder output from all 47 species
Aev_g17361 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37610 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14978 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.06 OrthoFinder output from all 47 species
Als_g15347 ATEXPA10,... alpha-class expansin & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g13780 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41819.t1 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0024.g020440 EXPB3, ATEXPB3,... not classified & original description: CDS=14-616 0.03 OrthoFinder output from all 47 species
Azfi_s0685.g082067 ATEXPA10,... alpha-class expansin & original description: CDS=1-783 0.04 OrthoFinder output from all 47 species
Cba_g15317 ATEXPA10,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G026000.1 ATEXPA10,... alpha-class expansin & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.17G040100.1 ATEXPA10,... alpha-class expansin & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.17G040500.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.17G041300.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.17G041600.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.17G042000.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.17G042100.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.29G046400.1 EXPA16, ATHEXP... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g22602 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20179 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017505001 ATHEXP BETA 1.4,... Putative expansin-B2 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_28036 ATHEXP ALPHA... Expansin-A29 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g42650.1 EXPB3, ATEXPB3,... beta-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g40720.1 ATHEXP BETA 1.4,... Expansin-B3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Lfl_g25335 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
MA_100868g0010 EXPA8, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp1g22720.1 ATEXPA4, ATEXP4,... Expansin-A4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g22740.1 ATEXPA1, EXP1,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp3g03930.1 ATEXPA1, EXP1,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp3g12280.1 ATEXPA3, EXP3,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp4g06560.1 EXPA16, ATHEXP... alpha-class expansin 0.04 OrthoFinder output from all 47 species
Nbi_g08040 ATEXPA10,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g22080 EXPB3, ATEXPB3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c7_12810V3.1 ATEXPA4, ATEXP4,... expansin A14 0.02 OrthoFinder output from all 47 species
Ppi_g10345 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g084780.3.1 EXP9, EXPA9,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Spa_g03664 EXP15, ATEXPA15,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48546 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004713_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e017334_P001 ATEXPA10,... alpha-class expansin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 191 268
IPR009009 RlpA-like_DPBB 93 180
No external refs found!