Nbi_g02507 (PGP6)

Aliases : PGP6

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g02507
Cluster	HCCA: Cluster_154

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00254310	ABCB19,...	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
AMTR_s00018p00193700	ABCB14,...	ABC transporter B family member 14 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AMTR_s00018p00193820	PGP1, ABCB1,...	ABC transporter B family member 1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AT4G18050	PGP9	P-glycoprotein 9	0.01	OrthoFinder output from all 47 species
Aev_g20821	PGP11	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07511	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g18810	PGP2	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g32929	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05873.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene45615.t1	PGP11, Aspi01Gene45615	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g07645	PGP13	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.06G076400.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.01	OrthoFinder output from all 47 species
Dcu_g40826	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os01g74630.1	PGP11, LOC_Os01g74630	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_126766g0010	PGP2	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
MA_934204g0010	No alias	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Msp_g44193	PGP2	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g57081	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1176	1324
IPR003439	ABC_transporter-like_ATP-bd	425	567
IPR011527	ABC1_TM_dom	838	1106
IPR011527	ABC1_TM_dom	80	352

External Links

No external refs found!

Nbi_g02507 (PGP6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation