Nbi_g01516

Description : component *(RINGLET/RLT) of ISWI chromatin remodeling complex & original description: none

Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g01516

Target	Alias	Description	ECC score	Gene Family Method
AT5G44180	No alias	Homeodomain-like transcriptional regulator	0.03	OrthoFinder output from all 47 species
MA_2434g0010	No alias	HOX-like transcription factor	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022183	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g50552	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc07g053610.3.1	Solyc07g053610	HOX-like transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e020198_P001	HB-1, Zm00001e020198	HOX-like transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e026524_P003	Zm00001e026524	HOX-like transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e028032_P001	Zm00001e028032	HOX-like transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028942	WHIM1_dom	883	921
IPR028941	WHIM2_dom	1053	1125
IPR018501	DDT_dom	488	541
IPR007759	Asxl_HARE-HTH	665	733

External Links

No external refs found!