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  5. Nbi_g01515

Nbi_g01515 (THO2, AtTHO2)


Aliases : THO2, AtTHO2

Description : component *(THOC2/Tho2) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0003635 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003635_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g01515
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00044110 THO2, AtTHO2,... RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
AT1G24706 THO2, AtTHO2 THO2 0.04 OrthoFinder output from all 47 species
Adi_g107430 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Aev_g08657 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Aspi01Gene09832.t1 THO2, AtTHO2,... component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Ceric.19G073400.1 THO2, AtTHO2,... component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Cre12.g507700 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Dac_g15531 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Dcu_g02056 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
Ehy_g01710 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
GSVIVT01011619001 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Lfl_g04297 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
MA_10430572g0010 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from all 47 species
Mp1g20320.1 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.05 OrthoFinder output from all 47 species
Ore_g16129 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Smo173562 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Solyc05g017890.4.1 THO2, AtTHO2,... component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR021418 THO_THOC2_C 925 1219
IPR032302 THOC2_N 446 594
IPR032302 THOC2_N 66 437
IPR021726 THO_THOC2_N 596 671
No external refs found!