Nbi_g01441 (RSH1, ATRSH1, AT-RSH1)

Aliases : RSH1, ATRSH1, AT-RSH1

Description : ppGpp hydrolase *(RSH1) & original description: none

Gene families : OG0003960 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g01441
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
Adi_g000749	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 39 species
Aev_g45058	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.01	OrthoFinder output from all 39 species
Ala_g02579	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.02	OrthoFinder output from all 39 species
Aob_g07422	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.01	OrthoFinder output from all 39 species
Aop_g13069	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.1	OrthoFinder output from all 39 species
Azfi_s0065.g035825	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: CDS=212-2167	0.02	OrthoFinder output from all 39 species
Cba_g03393	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.02	OrthoFinder output from all 39 species
Ceric.08G066100.1	RSH1, ATRSH1,...	ppGpp hydrolase *(RSH1) & original description:...	0.04	OrthoFinder output from all 39 species
Dac_g23400	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 39 species
Dcu_g02008	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.01	OrthoFinder output from all 39 species
Dde_g48904	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 39 species
Len_g17577	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.02	OrthoFinder output from all 39 species
Lfl_g03474	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.02	OrthoFinder output from all 39 species
Msp_g15202	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 39 species
Pir_g03220	No alias	not classified & original description: none	0.03	OrthoFinder output from all 39 species
Pir_g12213	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 39 species
Sam_g19490	No alias	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 39 species
Sam_g26547	No alias	not classified & original description: none	0.02	OrthoFinder output from all 39 species
Spa_g12236	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.06	OrthoFinder output from all 39 species
Tin_g28376	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.07	OrthoFinder output from all 39 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004820	glycine-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006166	purine ribonucleoside salvage	IEP	HCCA
BP	GO:0006190	inosine salvage	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008252	nucleotidase activity	IEP	HCCA
MF	GO:0008253	5'-nucleotidase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
BP	GO:0009119	ribonucleoside metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009163	nucleoside biosynthetic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042278	purine nucleoside metabolic process	IEP	HCCA
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	HCCA
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043101	purine-containing compound salvage	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043174	nucleoside salvage	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046102	inosine metabolic process	IEP	HCCA
BP	GO:0046103	inosine biosynthetic process	IEP	HCCA
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	HCCA
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0050483	IMP 5'-nucleotidase activity	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004095	TGS	542	601
IPR007685	RelA_SpoT	359	475

External Links

No external refs found!

Nbi_g01441 (RSH1, ATRSH1, AT-RSH1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation