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  5. Nbi_g01170

Nbi_g01170


Description : translation elongation factor *(EF-Tu) & original description: none


Gene families : OG0001071 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0001071_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g01170
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT4G02930 No alias GTP binding Elongation factor Tu family protein 0.01 OrthoFinder output from all 39 species
Adi_g046232 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Aev_g08675 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Als_g10160 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Als_g33021 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Aop_g11193 No alias translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 39 species
Aspi01Gene58375.t1 Aspi01Gene58375 translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Cba_g07152 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 39 species
Cba_g60703 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 39 species
Ceric.33G051100.1 Ceric.33G051100 translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 39 species
Dac_g36457 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 39 species
Dcu_g01379 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Ehy_g15550 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
GSVIVT01011073001 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 39 species
LOC_Os03g63410.1 LOC_Os03g63410 EF-Tu translation elongation factor 0.01 OrthoFinder output from all 39 species
Len_g01241 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 39 species
Sacu_v1.1_s0030.g010298 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Sam_g24887 No alias translation elongation factor *(EF-Tu) & original... 0.01 OrthoFinder output from all 39 species
Spa_g01140 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 39 species
Tin_g06040 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 289 358
IPR004160 Transl_elong_EFTu/EF1A_C 363 456
IPR000795 T_Tr_GTP-bd_dom 72 265
No external refs found!