GSVIVT01028860001


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000179 (Gene family) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01028860001
Cluster HCCA cluster: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT5G17200 No alias Pectin lyase-like superfamily protein 0.02 Gene family
LOC_Os05g50960 Os05g0587000 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d011369 GRMZM2G052844 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d019282 GRMZM2G057296 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 147 266
IPR000743 Glyco_hydro_28 395 525
No external refs found!