GSVIVT01028819001


Description : No description available


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01028819001
Cluster HCCA cluster: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT3G02330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT5G47460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
GSVIVT01026025001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os01g01115 Os01g0101150 No description available 0.03 Gene family
LOC_Os01g19380 Os01g0299150,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os01g60430 Os01g0819800 No description available 0.15 Gene family
LOC_Os01g74600 Os01g0977400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os02g44480 Os02g0663900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os02g53050 Os02g0769900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os02g58330 Os02g0830000 No description available 0.02 Gene family
LOC_Os03g11700 Os03g0216400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g35650 Os04g0436800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.04 Gene family
LOC_Os05g05490 Os05g0147600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os08g40020 Os08g0511000 No description available 0.03 Gene family
LOC_Os10g40920 Os10g0558600 No description available 0.05 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.04 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os12g06650 Os12g0163600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.09 Gene family
MA_11074g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_121267g0010 No alias No description available 0.02 Gene family
MA_14938g0010 No alias No description available 0.02 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_183278g0010 No alias No description available 0.02 Gene family
MA_27147g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_31170g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_9526611g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo101 PACid_15417675 No description available 0.02 Gene family
Smo109283 PACid_15402761 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo123298 PACid_15421951 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.03 Gene family
Solyc01g081560.2.1 Solyc01g081560.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc02g088650.1.1 Solyc02g088650.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.03 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc06g066080.1.1 Solyc06g066080.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc08g078570.2.1 Solyc08g078570.2 No description available 0.05 Gene family
Solyc09g009790.3.1 Solyc09g009790.3 No description available 0.04 Gene family
Solyc09g009950.3.1 Solyc09g009950.3 No description available 0.06 Gene family
Solyc09g059580.2.1 Solyc09g059580.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.04 Gene family
Solyc11g007230.1.1 Solyc11g007230.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g008970.1.1 Solyc11g008970.1 No description available 0.02 Gene family
Zm00001d012961 GRMZM2G144071 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.05 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d037036 GRMZM2G129783 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d039449 No alias No description available 0.07 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d043081 GRMZM2G350410 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d048451 GRMZM2G171994 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d052146 GRMZM2G158839 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 382 429
IPR002885 Pentatricopeptide_repeat 181 224
IPR002885 Pentatricopeptide_repeat 584 631
IPR002885 Pentatricopeptide_repeat 80 126
IPR002885 Pentatricopeptide_repeat 281 328
IPR002885 Pentatricopeptide_repeat 660 683
IPR002885 Pentatricopeptide_repeat 458 484
IPR002885 Pentatricopeptide_repeat 155 177
IPR032867 DYW_dom 758 870
No external refs found!