GSVIVT01028249001


Description : 29.3.3 protein.targeting.chloroplast Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. Albino or Glassy Yellow 1 (AGY1)


Gene families : OG_01_0001773 (Gene family) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01028249001
Cluster HCCA cluster: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AT4G01800 SECA1, AtcpSecA, AGY1 Albino or Glassy Yellow 1 0.05 Gene family
Cpa|evm.model.tig00000219.51 No alias 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.04 Gene family
Cre12.g517900 No alias 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.06 Gene family
LOC_Os01g21820 Os01g0321300 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.1 Gene family
LOC_Os11g08980 Os11g0195100 29.3.3 protein.targeting.chloroplast Encodes a component... 0.04 Gene family
Smo156007 PACid_15405959 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.06 Gene family
Solyc01g080840.3.1 Solyc01g080840.3 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.18 Gene family
Zm00001d004707 GRMZM2G090020,... 29.3.3 protein.targeting.chloroplast Encodes a component... 0.03 Gene family
Zm00001d040686 GRMZM5G880102 29.3.3 protein.targeting.chloroplast Encodes the ATPase... 0.1 Gene family

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan
CC GO:0016020 membrane IEA InterProScan
BP GO:0017038 protein import IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011115 SecA_DEAD 202 366
IPR011130 SecA_preprotein_X-link_dom 216 322
IPR011116 SecA_Wing/Scaffold 672 887
IPR011115 SecA_DEAD 19 198
No external refs found!