Nbi_g00393

Description : component *(eS17) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001873_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g00393

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00243530	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT2G04390	No alias	Ribosomal S17 family protein	0.03	OrthoFinder output from all 47 species
AT2G05220	No alias	Ribosomal S17 family protein	0.05	OrthoFinder output from all 47 species
AT3G10610	No alias	Ribosomal S17 family protein	0.04	OrthoFinder output from all 47 species
AT5G04800	No alias	Ribosomal S17 family protein	0.02	OrthoFinder output from all 47 species
Aop_g12251	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g30259	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.34G043500.1	Ceric.34G043500	component *(eS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cre12.g498250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Ehy_g08830	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01033920001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01034653001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Gb_20256	No alias	component RPS17 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_184894g0010	No alias	component RPS17 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp8g18950.1	No alias	component RPS17 of SSU proteome	0.04	OrthoFinder output from all 47 species
Pp3c2_34790V3.1	Pp3c2_34790	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c3_14880V3.1	Pp3c3_14880	Ribosomal S17 family protein	0.02	OrthoFinder output from all 47 species
Pp3c7_21070V3.1	Pp3c7_21070	Ribosomal S17 family protein	0.03	OrthoFinder output from all 47 species
Pp3c7_21140V3.1	Pp3c7_21140	Ribosomal S17 family protein	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004150	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g12734	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Solyc05g055230.2.1	Solyc05g055230	component RPS17 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc10g150146.1.1	Solyc10g150146	component RPS17 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc11g006690.1.1	Solyc11g006690	component RPS17 of SSU proteome	0.02	OrthoFinder output from all 47 species
Tin_g00206	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	119

External Links

No external refs found!

Nbi_g00393

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation