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  5. Nbi_g00386

Nbi_g00386


Description : component *(uL5c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0007287 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007287_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g00386

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00259120 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
AT4G01310 No alias Ribosomal L5P family protein 0.09 OrthoFinder output from all 47 species
Adi_g040703 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aev_g08868 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ala_g07051 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Als_g00607 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Aob_g01084 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Aop_g10101 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Aspi01Gene03150.t1 Aspi01Gene03150 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0114.g046128 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cba_g03728 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ceric.16G001900.1 Ceric.16G001900 component *(uL5c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dac_g11621 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g18361 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g06048 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ehy_g04389 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01027006001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Gb_03076 No alias component psRPL5 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os03g03360.1 LOC_Os03g03360 component psRPL5 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Len_g49952 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Lfl_g01005 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
MA_8012412g0010 No alias 50S ribosomal protein L5, chloroplastic OS=Spinacia... 0.06 OrthoFinder output from all 47 species
MA_86404g0010 No alias 50S ribosomal protein L5, chloroplastic OS=Spinacia... 0.07 OrthoFinder output from all 47 species
Mp1g19970.1 No alias component psRPL5 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Msp_g12267 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g17964 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Pir_g10124 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pnu_g31745 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Pp3c1_25850V3.1 Pp3c1_25850 Ribosomal L5P family protein 0.04 OrthoFinder output from all 47 species
Pp3c2_17110V3.1 Pp3c2_17110 Ribosomal L5P family protein 0.04 OrthoFinder output from all 47 species
Ppi_g03610 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021655 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g11515 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sam_g35847 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Smo6364 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Solyc09g007560.4.1 Solyc09g007560 component psRPL5 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Spa_g04808 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Tin_g10891 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Zm00001e000182_P001 Zm00001e000182 component psRPL5 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 90 146
IPR031309 Ribosomal_L5_C 150 243
No external refs found!