GSVIVT01027577001


Description : 27.3.24 RNA.regulation of transcription.MADS box transcription factor family sequence suggests this encodes a MADS-box transcription factor AGAMOUS-like 6 (AGL6)


Gene families : OG_01_0000006 (Gene family) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01027577001
Cluster HCCA cluster: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.05 Gene family
AT2G45650 AGL6 AGAMOUS-like 6 0.03 Gene family
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.05 Gene family
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.03 Gene family
GSVIVT01000802001 No alias No description available 0.03 Gene family
GSVIVT01033253001 No alias No description available 0.03 Gene family
LOC_Os01g10504 Os01g0201700 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
LOC_Os03g08754 Os03g0186600 33.99 development.unspecified Encodes a nuclear protein... 0.03 Gene family
LOC_Os03g11614 Os03g0215400 33.99 development.unspecified Encodes a MADS box... 0.03 Gene family
LOC_Os05g11380 No alias 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
LOC_Os06g23950 Os06g0347700 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
MA_211156g0010 No alias 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
MA_69370g0010 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Smo121275 PACid_15416177 No description available 0.03 Gene family
Solyc01g093960.3.1 Solyc01g093960.3 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Solyc01g106710.1.1 Solyc01g106710.1 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Solyc01g106730.2.1 Solyc01g106730.2 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Solyc02g065730.2.1 Solyc02g065730.2 33.99 development.unspecified MADS box gene negatively... 0.03 Gene family
Solyc12g056460.2.1 Solyc12g056460.2 No description available 0.05 Gene family
Zm00001d006094 GRMZM2G129034 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Zm00001d021057 GRMZM2G097059 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d027957 GRMZM2G059102 33.99 development.unspecified Encodes a nuclear protein... 0.02 Gene family
Zm00001d031620 GRMZM2G159397 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d048082 GRMZM2G102161 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Zm00001d051465 GRMZM2G003514 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0046983 protein dimerization activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002487 TF_Kbox 84 169
IPR002100 TF_MADSbox 10 57
No external refs found!