GSVIVT01027456001


Description : 27.3.26 RNA.regulation of transcription.MYB-related transcription factor family Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. circadian clock associated 1 (CCA1) BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G01060.3) Has 2694


Gene families : OG_01_0007396 (Gene family) Phylogenetic Tree(s): OG0007396_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01027456001
Cluster HCCA cluster: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.08 Gene family
AT2G46830 CCA1 circadian clock associated 1 0.11 Gene family
Smo166821 PACid_15419362 No description available 0.04 Gene family
Solyc10g005080.3.1 Solyc10g005080.3 27.3.26 RNA.regulation of transcription.MYB-related... 0.07 Gene family
Zm00001d024546 GRMZM2G474769 27.3.26 RNA.regulation of transcription.MYB-related... 0.11 Gene family
Zm00001d049543 GRMZM2G014902 27.3.26 RNA.regulation of transcription.MYB-related... 0.11 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!