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  5. Nbi_g00069

Nbi_g00069 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g00069

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00158560 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder output from all 47 species
AT1G51060 HTA10 histone H2A 10 0.07 OrthoFinder output from all 47 species
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.02 OrthoFinder output from all 47 species
AT3G20670 HTA13 histone H2A 13 0.07 OrthoFinder output from all 47 species
AT4G27230 HTA2 histone H2A 2 0.02 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.09 OrthoFinder output from all 47 species
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g011169 HTA7 histone *(H2A) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g011321 GAMMA-H2AX,... histone *(H2A) & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g034181 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g043980 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g047730 HTA7 histone *(H2A) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g070713 HTA7 histone *(H2A) & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g086789 GAMMA-H2AX,... histone *(H2A) & original description: none 0.12 OrthoFinder output from all 47 species
Ala_g14593 GAMMA-H2AX,... histone *(H2A) & original description: none 0.12 OrthoFinder output from all 47 species
Ala_g17952 HTA7 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g11673 GAMMA-H2AX,... histone *(H2A) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g01994 HTA7 histone *(H2A) & original description: none 0.12 OrthoFinder output from all 47 species
Aop_g07168 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09992 GAMMA-H2AX,... histone *(H2A) & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g09993 GAMMA-H2AX,... histone *(H2A) & original description: none 0.14 OrthoFinder output from all 47 species
Aop_g30450 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene23033.t1 HTA6, Aspi01Gene23033 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene25411.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene45042.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.09 OrthoFinder output from all 47 species
Azfi_s0005.g009474 GAMMA-H2AX,... histone *(H2A) & original description: CDS=131-538 0.04 OrthoFinder output from all 47 species
Cba_g07967 GAMMA-H2AX,... histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.25G059300.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50594046... 0.09 OrthoFinder output from all 47 species
Ceric.32G068500.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50597336... 0.04 OrthoFinder output from all 47 species
Ceric.37G036600.1 HTA7, Ceric.37G036600 histone *(H2A) & original description: pacid=50616072... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder output from all 47 species
Dac_g13937 GAMMA-H2AX,... histone *(H2A) & original description: none 0.14 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.13 OrthoFinder output from all 47 species
Dcu_g05168 GAMMA-H2AX,... histone *(H2A) & original description: none 0.13 OrthoFinder output from all 47 species
Dde_g12969 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01011034001 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Gb_25326 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Gb_39944 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os01g31800.1 HTA12, LOC_Os01g31800 histone (H2A) 0.06 OrthoFinder output from all 47 species
LOC_Os03g17100.1 HTA12, LOC_Os03g17100 histone (H2A) 0.07 OrthoFinder output from all 47 species
Len_g02525 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03984 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05493 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g05644 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g20304 GAMMA-H2AX,... histone *(H2A) & original description: none 0.09 OrthoFinder output from all 47 species
Len_g26088 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55104 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39719 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g39892 HTA10 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
MA_94328g0020 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
MA_962778g0010 HTA7 histone (H2A) 0.06 OrthoFinder output from all 47 species
Msp_g11191 GAMMA-H2AX,... histone *(H2A) & original description: none 0.15 OrthoFinder output from all 47 species
Msp_g20371 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g29485 GAMMA-H2AX,... histone *(H2A) & original description: none 0.15 OrthoFinder output from all 47 species
Msp_g38927 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29875 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.11 OrthoFinder output from all 47 species
Ppi_g09936 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63798 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10764 No alias histone *(H2A) & original description: none 0.1 OrthoFinder output from all 47 species
Sam_g10765 No alias histone *(H2A) & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g21361 No alias histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29426 No alias histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.06 OrthoFinder output from all 47 species
Solyc09g010400.3.1 HTA12, Solyc09g010400 histone (H2A) 0.05 OrthoFinder output from all 47 species
Solyc09g082710.3.1 GAMMA-H2AX,... histone (H2A) 0.05 OrthoFinder output from all 47 species
Solyc11g073250.2.1 HTA12, Solyc11g073250 histone (H2A) 0.08 OrthoFinder output from all 47 species
Spa_g03104 GAMMA-H2AX,... histone *(H2A) & original description: none 0.18 OrthoFinder output from all 47 species
Spa_g03105 GAMMA-H2AX,... histone *(H2A) & original description: none 0.16 OrthoFinder output from all 47 species
Spa_g03210 HTA6 histone *(H2A) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g03519 GAMMA-H2AX,... histone *(H2A) & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g03522 GAMMA-H2AX,... histone *(H2A) & original description: none 0.16 OrthoFinder output from all 47 species
Spa_g03889 HTA7 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g16293 GAMMA-H2AX,... histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g34289 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45415 HTA6 histone *(H2A) & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g45749 HTA7 histone *(H2A) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g46345 GAMMA-H2AX,... histone *(H2A) & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g11136 GAMMA-H2AX,... histone *(H2A) & original description: none 0.17 OrthoFinder output from all 47 species
Tin_g14389 HTA7 histone *(H2A) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g42031 GAMMA-H2AX,... histone *(H2A) & original description: none 0.11 OrthoFinder output from all 47 species
Tin_g44326 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e011643_P001 HTA6, Zm00001e011643 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e020483_P001 HTA6, Zm00001e020483 histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e034815_P001 HTA12, Zm00001e034815 histone (H2A) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 94 127
IPR007125 Histone_H2A/H2B/H3 10 91
No external refs found!