GSVIVT01026985001


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000179 (Gene family) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01026985001
Cluster HCCA cluster: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT2G23900 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT3G06770 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT3G61490 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT4G23820 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G41870 No alias Pectin lyase-like superfamily protein 0.02 Gene family
GSVIVT01028859001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os02g54030 Os02g0781000 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os05g50960 Os05g0587000 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
MA_10430135g0020 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Smo78556 PACid_15422235 No description available 0.02 Gene family
Solyc05g050000.3.1 Solyc05g050000.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc09g075460.3.1 Solyc09g075460.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d019282 GRMZM2G057296 10.6.3 cell wall.degradation.pectate lyases and... 0.01 Gene family
Zm00001d034727 GRMZM5G882418 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d053395 GRMZM2G174598 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 144 266
No external refs found!