GSVIVT01025691001


Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus. auxin response factor 16 (ARF16)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01025691001
Cluster HCCA cluster: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G35540 ARF14 auxin response factor 14 0.06 Gene family
LOC_Os04g43910 Os04g0519700 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
MA_10430707g0020 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_10431695g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_122218g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_5089g0010 No alias No description available 0.08 Gene family
MA_85955g0020 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.01 Gene family
Solyc02g037530.3.1 Solyc02g037530.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc07g016180.3.1 Solyc07g016180.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
Solyc09g007810.3.1 Solyc09g007810.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.07 Gene family
Solyc12g042077.1.1 Solyc12g042077.1 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Zm00001d015243 GRMZM2G102845 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 119 220
IPR010525 Auxin_resp 245 328
No external refs found!