Ehy_g30947 (ATRPA70A, RPA1A,...)

Aliases : ATRPA70A, RPA1A, ATRPA1A, RPA70A

Description : component *(RPA1) of RPA presynaptic filament assembly factor complex & original description: none

Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g30947

Target	Alias	Description	ECC score	Gene Family Method
Aop_g39112	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Azfi_s0262.g060816	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Cba_g20222	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Ceric.10G009100.1	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.02	OrthoFinder output from all 47 species
LOC_Os02g53680.1	ATRPA70A, RPA1A,...	component RPA1 of single-stranded-DNA binding RPA...	0.02	OrthoFinder output from all 47 species
Nbi_g23756	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Ore_g03583	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008804	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Tin_g09994	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Zm00001e023770_P001	ATRPA70A, RPA1A,...	component RPA1 of single-stranded-DNA binding RPA...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	792	808
IPR031657	REPA_OB_2	350	454
IPR013955	Rep_factor-A_C	512	661
IPR004365	NA-bd_OB_tRNA	240	323
IPR007199	Rep_factor-A_N	7	103

External Links

No external refs found!

Ehy_g30947 (ATRPA70A, RPA1A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation