MA_23378g0020


Description : Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana (sp|f4j9m5|chr12_arath : 201.0)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0001935 (LandPlants) Phylogenetic Tree(s): OG_02_0001935_tree ,
OG_03_0002288 (SeedPlants) Phylogenetic Tree(s): OG_03_0002288_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_23378g0020
Cluster HCCA: Cluster_487

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.04 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.02 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.05 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
MA_10436824g0010 No alias No annotation 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Pp3c10_6710V3.1 No alias SNF2 domain-containing protein / helicase... 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 LandPlants
AT3G06010 ATCHR12 Homeotic gene regulator 0.05 LandPlants
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.02 LandPlants
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 LandPlants
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 LandPlants
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.02 LandPlants
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.02 LandPlants
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 SeedPlants
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.01 SeedPlants
AT3G06010 ATCHR12 Homeotic gene regulator 0.03 SeedPlants
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.02 SeedPlants
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.02 SeedPlants
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.02 SeedPlants
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000330 SNF2_dom 4 117
No external refs found!