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  5. Ehy_g30348

Ehy_g30348 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : not classified & original description: none


Gene families : OG0008539 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008539_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g30348
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cba_g13711 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432328g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10432328g0030 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10432328g0040 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g28991 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR012317 Poly(ADP-ribose)pol_cat_dom 1269 1442
IPR012317 Poly(ADP-ribose)pol_cat_dom 1488 1600
IPR041677 DNA2/NAM7_AAA_11 419 848
IPR041679 DNA2/NAM7-like_C 860 1043
No external refs found!