GSVIVT01023971001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01023971001
Cluster HCCA cluster: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G05240 MEF19 mitochondrial editing factor 19 0.04 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 Gene family
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
GSVIVT01003422001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g01115 Os01g0101150 No description available 0.02 Gene family
LOC_Os01g41650 Os01g0600400 No description available 0.04 Gene family
LOC_Os01g62910 Os01g0848300 No description available 0.06 Gene family
LOC_Os03g04390 Os03g0136700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os03g63560 Os03g0852700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g39410 Os04g0469400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.02 Gene family
LOC_Os05g30710 Os05g0370000 No description available 0.02 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.08 Gene family
LOC_Os06g30940 Os06g0506100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os12g30620 Os12g0490100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_100287g0010 No alias No description available 0.04 Gene family
MA_101084g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_10432670g0020 No alias No description available 0.03 Gene family
MA_106123g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_116829g0010 No alias No description available 0.04 Gene family
MA_123466g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_135075g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_136326g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_14938g0010 No alias No description available 0.03 Gene family
MA_175688g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_20622g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_25584g0010 No alias No description available 0.02 Gene family
MA_38266g0010 No alias No description available 0.03 Gene family
MA_43615g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_474261g0010 No alias No description available 0.02 Gene family
MA_50118g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_7691g0010 No alias No description available 0.02 Gene family
MA_8210920g0010 No alias No description available 0.02 Gene family
MA_82595g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_86894g0010 No alias No description available 0.02 Gene family
MA_94165g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_9526611g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo47998 PACid_15423210 No description available 0.03 Gene family
Smo84657 PACid_15418630 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo90123 PACid_15410274 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g007850.2.1 Solyc01g007850.2 No description available 0.02 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.05 Gene family
Solyc01g095690.2.1 Solyc01g095690.2 No description available 0.04 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc03g007840.1.1 Solyc03g007840.1 35.1.27 not assigned.no ontology.tetratricopeptide... 0.06 Gene family
Solyc03g025700.1.1 Solyc03g025700.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.03 Gene family
Solyc03g111210.3.1 Solyc03g111210.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.03 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.04 Gene family
Solyc11g010220.2.1 Solyc11g010220.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g011860.1.1 Solyc11g011860.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g066920.1.1 Solyc11g066920.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g071370.1.1 Solyc11g071370.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Solyc12g006575.1.1 Solyc12g006575.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Solyc12g096510.2.1 Solyc12g096510.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d020825 GRMZM5G851929 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d025695 GRMZM2G481373 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.12 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.07 Gene family
Zm00001d032185 GRMZM2G161368 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d039193 GRMZM2G440349 No description available 0.08 Gene family
Zm00001d039873 GRMZM2G380195 No description available 0.09 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 394 440
IPR002885 Pentatricopeptide_repeat 90 136
IPR002885 Pentatricopeptide_repeat 494 540
IPR032867 DYW_dom 669 791
IPR002885 Pentatricopeptide_repeat 66 89
IPR002885 Pentatricopeptide_repeat 193 223
IPR002885 Pentatricopeptide_repeat 165 190
IPR002885 Pentatricopeptide_repeat 294 323
IPR002885 Pentatricopeptide_repeat 266 291
IPR002885 Pentatricopeptide_repeat 469 492
No external refs found!