GSVIVT01023149001


Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions. auxin response factor 1 (ARF1)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01023149001
Cluster HCCA cluster: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AT1G59750 ARF1 auxin response factor 1 0.03 Gene family
Cpa|evm.model.tig00020904.93 No alias No description available 0.02 Gene family
GSVIVT01008639001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
GSVIVT01016266001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
GSVIVT01025198001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os02g35140 Os02g0557200 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os02g46710 Os02g0694300 No description available 0.02 Gene family
LOC_Os11g32110 Os11g0523800 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os12g29520 Os12g0479400 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_10199543g0020 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_169311g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Smo424114 PACid_15422082 No description available 0.02 Gene family
Solyc05g047460.3.1 Solyc05g047460.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d001945 GRMZM2G034840 No description available 0.03 Gene family
Zm00001d011953 GRMZM2G116557 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Zm00001d023659 GRMZM2G006042 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.06 Gene family
Zm00001d026540 GRMZM2G086949 No description available 0.03 Gene family
Zm00001d039006 GRMZM2G030710 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d043431 GRMZM2G056120 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d043922 GRMZM2G437460 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 228
IPR010525 Auxin_resp 254 337
IPR033389 AUX/IAA_dom 550 643
No external refs found!