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  5. Ehy_g29348

Ehy_g29348


Description : trans-splicing factor *(PPR4) & original description: none


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g29348

Target Alias Description ECC score Gene Family Method Actions
MA_10434757g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Sam_g26485 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 596 713
IPR002885 Pentatricopeptide_repeat 373 417
IPR002885 Pentatricopeptide_repeat 720 765
IPR000504 RRM_dom 125 197
IPR002885 Pentatricopeptide_repeat 532 591
IPR002885 Pentatricopeptide_repeat 289 346
IPR002885 Pentatricopeptide_repeat 463 522
No external refs found!