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  5. Ehy_g29046

Ehy_g29046


Description : snRNP-associated protein *(SR140) & original description: none


Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g29046

Target Alias Description ECC score Gene Family Method Actions
Adi_g011558 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059804 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02691 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01963 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42378 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21519 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11316 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G097400.1 Ceric.14G097400 snRNP-associated protein *(SR140) & original... 0.06 OrthoFinder output from all 47 species
Dac_g01031 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10046 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01035985001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
LOC_Os02g08360.1 LOC_Os02g08360 snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species
Lfl_g11150 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Mp6g17130.1 No alias snRNP-associated protein (SR140) 0.03 OrthoFinder output from all 47 species
Ore_g09321 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02308 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g08483 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g025280.4.1 Solyc03g025280 snRNP-associated protein (SR140) 0.04 OrthoFinder output from all 47 species
Spa_g12506 No alias snRNP-associated protein *(SR140) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g07962 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013823_P001 Zm00001e013823 snRNP-associated protein (SR140) 0.05 OrthoFinder output from all 47 species
Zm00001e013828_P003 Zm00001e013828 snRNP-associated protein (SR140) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 205 278
IPR013170 mRNA_splic_Cwf21_dom 860 900
IPR000061 Surp 350 402
IPR006569 CID_dom 466 594
No external refs found!