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  5. Ehy_g28663

Ehy_g28663 (HTA6)


Aliases : HTA6

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g28663

Target Alias Description ECC score Gene Family Method Actions
Cba_g01576 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Ehy_g12272 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g28664 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g15977 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01820 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g28142 HTA2 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023569 HTA7 histone *(H2A) & original description: CDS=1-555 0.02 OrthoFinder output from all 47 species
Smo166626 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Spa_g51468 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012144_P001 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 10 89
IPR032454 Histone_H2A_C 92 113
No external refs found!