GSVIVT01021781001


Description : 27.3 RNA.regulation of transcription encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors. STRUWWELPETER (SWP)


Gene families : OG_01_0001852 (Gene family) Phylogenetic Tree(s): OG0001852_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01021781001
Cluster HCCA cluster: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AT3G04740 ATMED14, MED14, SWP RNA polymerase II transcription mediators 0.04 Gene family
Cre03.g190550 No alias No description available 0.01 Gene family
LOC_Os08g24400 Os08g0332800 27.3 RNA.regulation of transcription encodes a protein... 0.03 Gene family
LOC_Os08g24420 Os08g0333000 27.3 RNA.regulation of transcription encodes a protein... 0.03 Gene family
LOC_Os09g10960 Os09g0281900 27.3 RNA.regulation of transcription encodes a protein... 0.08 Gene family
MA_10435964g0030 No alias 27.3 RNA.regulation of transcription encodes a protein... 0.07 Gene family
Smo90823 PACid_15415631 No description available 0.04 Gene family
Solyc01g097320.3.1 Solyc01g097320.3 27.3 RNA.regulation of transcription encodes a protein... 0.09 Gene family
Zm00001d005507 GRMZM2G446872 27.3 RNA.regulation of transcription encodes a protein... 0.09 Gene family

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEA InterProScan
BP GO:0006357 regulation of transcription by RNA polymerase II IEA InterProScan
CC GO:0016592 mediator complex IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013947 Mediator_Med14 8 197
No external refs found!