MA_187850g0010


Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana (sp|o65567|pp342_arath : 408.0)


Gene families : OG_01_0007364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007364_tree ,
OG_02_0005355 (LandPlants) Phylogenetic Tree(s): OG_02_0005355_tree ,
OG_03_0010911 (SeedPlants) Phylogenetic Tree(s): OG_03_0010911_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_187850g0010
Cluster HCCA: Cluster_538

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.06 Archaeplastida
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 Archaeplastida
Mp1g07710.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 Archaeplastida
Pp3c5_2530V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 Archaeplastida
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 LandPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 SeedPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 SeedPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 682 711
IPR002885 Pentatricopeptide_repeat 646 676
IPR002885 Pentatricopeptide_repeat 496 551
IPR033443 PPR_long 314 450
IPR002885 Pentatricopeptide_repeat 714 760
IPR002885 Pentatricopeptide_repeat 578 620
No external refs found!