GSVIVT01020533001


Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000285 (Gene family) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01020533001
Cluster HCCA cluster: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
LOC_Os01g19490 Os01g0301000 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
LOC_Os01g19548 Os01g0301700 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
LOC_Os02g55310 Os02g0796400 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
LOC_Os07g40750 Os07g0598500 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
LOC_Os10g35730 Os10g0501000 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
MA_100637g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Smo420704 PACid_15415117 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Solyc01g079320.3.1 Solyc01g079320.3 27.3.67 RNA.regulation of transcription.putative... 0.06 Gene family
Solyc02g078330.3.1 Solyc02g078330.3 27.3.67 RNA.regulation of transcription.putative... 0.04 Gene family
Solyc02g078350.3.1 Solyc02g078350.3 27.3.67 RNA.regulation of transcription.putative... 0.04 Gene family
Zm00001d023915 GRMZM2G105229 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 125 153
IPR002885 Pentatricopeptide_repeat 161 187
IPR002885 Pentatricopeptide_repeat 337 362
IPR002885 Pentatricopeptide_repeat 232 258
IPR002885 Pentatricopeptide_repeat 300 325
IPR002885 Pentatricopeptide_repeat 368 394
No external refs found!