AMTR_s00439p00011030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00439.2

Description : Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0008982 (LandPlants) Phylogenetic Tree(s): OG_02_0008982_tree ,
OG_03_0011183 (SeedPlants) Phylogenetic Tree(s): OG_03_0011183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00439p00011030
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
AMTR_s00127p00016340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.02 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.05 Archaeplastida
AT4G25270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G46440 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01003650001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01003766001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01011455001 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.02 Archaeplastida
Gb_03545 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Smo102603 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Smo120613 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida
Smo127736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo77340 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Solyc08g076150.4.1 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
Solyc12g096680.1.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Zm00001e019452_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 7 31
No external refs found!