GSVIVT01019231001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01019231001
Cluster HCCA cluster: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Gene family
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Gene family
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01009789001 No alias No description available 0.03 Gene family
LOC_Os05g30710 Os05g0370000 No description available 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os07g20420 Os07g0299800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os08g40020 Os08g0511000 No description available 0.03 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.03 Gene family
MA_193080g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_33151g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_36643g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_52613g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_8210920g0010 No alias No description available 0.03 Gene family
MA_96662g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc01g006920.3.1 Solyc01g006920.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc01g010510.3.1 Solyc01g010510.3 No description available 0.06 Gene family
Solyc01g091610.1.1 Solyc01g091610.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc03g063160.1.1 Solyc03g063160.1 No description available 0.08 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.04 Gene family
Solyc03g098420.3.1 Solyc03g098420.3 No description available 0.04 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.08 Gene family
Solyc05g012630.1.1 Solyc05g012630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.03 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc08g023640.1.1 Solyc08g023640.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc09g009790.3.1 Solyc09g009790.3 No description available 0.03 Gene family
Solyc09g009950.3.1 Solyc09g009950.3 No description available 0.03 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.04 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.03 Gene family
Zm00001d021411 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 286
IPR002885 Pentatricopeptide_repeat 320 350
IPR002885 Pentatricopeptide_repeat 289 318
IPR002885 Pentatricopeptide_repeat 182 206
IPR002885 Pentatricopeptide_repeat 79 126
IPR002885 Pentatricopeptide_repeat 418 465
IPR002885 Pentatricopeptide_repeat 154 177
IPR032867 DYW_dom 592 716
No external refs found!