GSVIVT01018450001


Description : 27.3.24 RNA.regulation of transcription.MADS box transcription factor family sequence suggests this encodes a MADS-box transcription factor AGAMOUS-like 6 (AGL6)


Gene families : OG_01_0000006 (Gene family) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01018450001
Cluster HCCA cluster: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.06 Gene family
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.05 Gene family
AT2G22630 AGL17 AGAMOUS-like 17 0.04 Gene family
AT2G45650 AGL6 AGAMOUS-like 6 0.03 Gene family
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 Gene family
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.04 Gene family
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.02 Gene family
AT4G11880 AGL14 AGAMOUS-like 14 0.05 Gene family
AT5G13790 AGL15 AGAMOUS-like 15 0.03 Gene family
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.04 Gene family
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.03 Gene family
AT5G62165 AGL42 AGAMOUS-like 42 0.02 Gene family
GSVIVT01008560001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
GSVIVT01022182001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
GSVIVT01025945001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
GSVIVT01033253001 No alias No description available 0.02 Gene family
GSVIVT01035477001 No alias 33.99 development.unspecified Encodes a member of the... 0.02 Gene family
LOC_Os01g10504 Os01g0201700 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
LOC_Os02g36924 Os02g0579600 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
LOC_Os02g45770 Os02g0682200 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
LOC_Os03g08754 Os03g0186600 33.99 development.unspecified Encodes a nuclear protein... 0.02 Gene family
LOC_Os03g11614 Os03g0215400 33.99 development.unspecified Encodes a MADS box... 0.06 Gene family
LOC_Os03g54170 Os03g0753100 33.99 development.unspecified Encodes a MADS box... 0.04 Gene family
LOC_Os04g49150 Os04g0580700 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
LOC_Os05g11380 No alias 33.99 development.unspecified Floral homeotic gene... 0.06 Gene family
LOC_Os05g11414 Os05g0203800 33.99 development.unspecified Floral homeotic gene... 0.04 Gene family
LOC_Os06g06750 Os06g0162800 27.3.24 RNA.regulation of transcription.MADS box... 0.04 Gene family
LOC_Os07g01820 Os07g0108900 33.99 development.unspecified Floral homeotic gene... 0.04 Gene family
LOC_Os08g41950 Os08g0531700 27.3.24 RNA.regulation of transcription.MADS box... 0.04 Gene family
LOC_Os09g02780 Os09g0116000 No description available 0.03 Gene family
LOC_Os09g32948 Os09g0507200 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
LOC_Os12g10540 Os12g0207000 33.99 development.unspecified AGAMOUS [AG]-like MADS box... 0.02 Gene family
MA_211156g0010 No alias 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
MA_69370g0010 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Smo121275 PACid_15416177 No description available 0.02 Gene family
Smo5960 PACid_15422574 No description available 0.02 Gene family
Solyc01g106170.3.1 Solyc01g106170.3 27.3.24 RNA.regulation of transcription.MADS box... 0.06 Gene family
Solyc02g065730.2.1 Solyc02g065730.2 33.99 development.unspecified MADS box gene negatively... 0.05 Gene family
Solyc04g005320.3.1 Solyc04g005320.3 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Solyc04g076700.3.1 Solyc04g076700.3 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Solyc05g012020.3.1 Solyc05g012020.3 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Solyc06g035560.2.1 Solyc06g035560.2 27.3.24 RNA.regulation of transcription.MADS box... 0.04 Gene family
Solyc06g064840.3.1 Solyc06g064840.3 27.3.24 RNA.regulation of transcription.MADS box... 0.04 Gene family
Solyc11g010570.2.1 Solyc11g010570.2 33.99 development.unspecified Encodes a nuclear protein... 0.04 Gene family
Solyc11g045310.2.1 Solyc11g045310.2 33.99 development.unspecified Encodes a member of the... 0.02 Gene family
Solyc12g038510.2.1 Solyc12g038510.2 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Zm00001d006094 GRMZM2G129034 27.3.24 RNA.regulation of transcription.MADS box... 0.09 Gene family
Zm00001d007949 GRMZM2G148693 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
Zm00001d008882 GRMZM2G359952 33.99 development.unspecified Floral homeotic gene... 0.04 Gene family
Zm00001d013259 GRMZM2G553379 33.99 development.unspecified Floral homeotic gene... 0.04 Gene family
Zm00001d015381 GRMZM2G130382 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d017614 GRMZM2G160565 27.3.24 RNA.regulation of transcription.MADS box... 0.05 Gene family
Zm00001d018142 GRMZM2G046885 33.99 development.unspecified Encodes a nuclear protein... 0.02 Gene family
Zm00001d018667 GRMZM2G072582 33.99 development.unspecified MADS box gene negatively... 0.02 Gene family
Zm00001d021057 GRMZM2G097059 27.3.24 RNA.regulation of transcription.MADS box... 0.07 Gene family
Zm00001d022088 GRMZM2G147716 33.99 development.unspecified Floral homeotic gene... 0.04 Gene family
Zm00001d023955 GRMZM2G010669 33.99 development.unspecified One of two genes (SHP1 and... 0.05 Gene family
Zm00001d025479 GRMZM2G069370 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d027425 GRMZM2G026223 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d027957 GRMZM2G059102 33.99 development.unspecified Encodes a nuclear protein... 0.02 Gene family
Zm00001d028217 GRMZM2G032070,... 33.99 development.unspecified MADS-box protein, binds K... 0.06 Gene family
Zm00001d031620 GRMZM2G159397 27.3.24 RNA.regulation of transcription.MADS box... 0.05 Gene family
Zm00001d037737 GRMZM2G052890 33.99 development.unspecified Floral homeotic gene... 0.04 Gene family
Zm00001d039434 GRMZM2G471089 33.99 development.unspecified Floral homeotic gene... 0.06 Gene family
Zm00001d041781 GRMZM2G160687 33.99 development.unspecified AGAMOUS [AG]-like MADS box... 0.05 Gene family
Zm00001d042591 GRMZM2G018589 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
Zm00001d048082 GRMZM2G102161 27.3.24 RNA.regulation of transcription.MADS box... 0.07 Gene family
Zm00001d050897 GRMZM2G055782,... 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d051465 GRMZM2G003514 27.3.24 RNA.regulation of transcription.MADS box... 0.04 Gene family
Zm00001d052180 GRMZM2G370777 33.99 development.unspecified Encodes a nuclear protein... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0046983 protein dimerization activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002487 TF_Kbox 83 170
IPR002100 TF_MADSbox 10 57
No external refs found!