GSVIVT01017209001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis. EARLY CHLOROPLAST BIOGENESIS2 (ECB2)


Gene families : OG_01_0008957 (Gene family) Phylogenetic Tree(s): OG0008957_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01017209001
Cluster HCCA cluster: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Gene family
LOC_Os05g49920 Os05g0574800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
MA_27726g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc03g119950.1.1 Solyc03g119950.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.15 Gene family
Zm00001d039096 GRMZM2G455587 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.11 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 734 857
IPR002885 Pentatricopeptide_repeat 360 408
IPR002885 Pentatricopeptide_repeat 159 205
IPR002885 Pentatricopeptide_repeat 560 608
IPR002885 Pentatricopeptide_repeat 436 462
IPR002885 Pentatricopeptide_repeat 262 289
IPR002885 Pentatricopeptide_repeat 636 659
IPR002885 Pentatricopeptide_repeat 335 359
IPR002885 Pentatricopeptide_repeat 233 259
No external refs found!